2003–04 AJ Auxerre season

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- Club: AJ Auxerre
- Season: 2003–04 (98th year in existence; 23rd consecutive season in the top flight)
- President: Jean-Claude Hamel
- Manager: Guy Roux
- Stadium: Stade de l'Abbé-Deschamps
- Competitions and results:
- Ligue 1: 14th place
- Coupe de France: Round of 16
- Coupe de la Ligue: Semi-finals
- UEFA Cup: Fourth round
- Top scorer: Djibril Cissé – 26 league goals, 30 in all competitions
- Average home league attendance: 12,323
- Season period: 1 July 2003 to 30 June 2004